Publications 2013--present

[1] Rostand Affogbolo, Claire Gauzente, Alain Guénoche, and Pascale Kuntz. Méta-analyse ordinale d'enquêtes d'opinion application aux usages de l'internet des objets en entreprise. Revue des Nouvelles Technologies de l'Information, Extraction et Gestion des Connaissances, RNTI-E-34:11--22, 2018. [ bib ]
[2] Alain Guénoche. Analyse des Préférences et Tournois Pondérés. Journal of Interdisciplinary Methodologies and Issues in Sciences, Graphs and social systems, February 2017. [ bib | DOI | http ]
[3] Jon Sanchez-Valle, Hector Tejero, Kristina Ibanez, Jose Luis Portero, Martin Krallinger, Fatima Al-Shahrour, Rafael Tabares-Seisdedos, Anaïs Baudot, and Alfonso Valencia. A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer's Disease, Glioblastoma and Lung cancer. Scientific Reports, 7(1):4474, 2017. [ bib | DOI | http ]
[4] G. Didier and L. Tichit. Designing optimal- and fast-on-average pattern matching algorithms. J. Discrete Algorithms, 42:45--60, 2017. [ bib | DOI | http ]
[5] Elisabeth Remy, Brigitte Mossé, and Denis Thieffry. Boolean Dynamics of Compound Regulatory circuits, pages 43--53. Springer International Publishing, Cham, 2016. [ bib | DOI | http ]
[6] Olivier Zugasti, Nishant Thakur, Jérôme Belougne, Barbara Squiban, C. Léopold Kurz, Julien Soulé, Shizue Omi, Laurent Tichit, Nathalie Pujol, and Jonathan J. Ewbank. A quantitative genome-wide rnai screen in c. elegans for antifungal innate immunity genes. BMC Biology, 14(1):35, Apr 2016. [ bib | DOI | http ]
[7] Rafael Tabarés-Seisdedos and Anaïs Baudot. Editorial: Direct and Inverse Comorbidities Between Complex Disorders. Frontiers in Physiology, 7(117), 2016. [ bib | DOI ]
[8] G. Didier, C. Brun, and A. Baudot. Identifying Communities from Multiplex Biological Networks. PeerJ, 3(e1525):1--9, 2015. [ bib | DOI ]
[9] S. Tripathi, A. Flobak, K. Chawla, A. Baudot, T. Bruland, L. Thommesen, M. Kuiper, and A. Lægreid. The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms. BMC Systems Biology, 9(1):40, 2015. [ bib | DOI | http ]
[10] A. Flobak, A. Baudot, E. Remy, L. Thommesen, D. Thieffry, M. Kuiper, and A. Lægreid. Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling. PLOS Computational Biology, 11(8):e1004426, 2015. [ bib | DOI | http ]
[11] E. Remy, S. Rebouissou, C. Chaouiya, A. Zinovyev, F. Radvanyi, and L. Calzone. A modelling approach to explain mutually exclusive and co-occurring genetic alterations in bladder tumorigenesis. Cancer research, 75(19):4042--52, aug 2015. [ bib | DOI | http ]
[12] M. Katsogiannou, C. Andrieu, V. Baylot, A. Baudot, N.J. Dusetti, O. Gayet, P. Finetti, C. Garrido, D. Birnbaum, F. Bertucci, C. Brun, and P. Rocchi. The functional landscape of Hsp27 reveals new cellular processes such as DNA repair and alternative splicing and proposes novel anticancer targets. Molecular & cellular proteomics : MCP, pages 3585--3601, oct 2014. [ bib | DOI | http ]
[13] Alain Guénoche. Single or Multiple Consensus for Linear Orders, pages 189--199. Springer New York, New York, NY, 2014. [ bib | DOI | http ]
[14] K. Ibáñez, C. Boullosa, R. Tabarés-Seisdedos, A. Baudot, and A. Valencia. Molecular Evidence for the Inverse Comorbidity between Central Nervous System Disorders and Cancers Detected by Transcriptomic Meta-analyses. PLoS Genetics, 10(2):e1004173, feb 2014. [ bib | DOI | http ]
[15] F. Montañana, R.A. Julien, P. Vaglio, L.R. Matthews, L. Tichit, and J.J. Ewbank. Icee an interface for c. elegans experiments. Worm, 3(3):e959420, 2014. PMID: 26430546. [ bib | DOI | arXiv | http ]
[16] A. Guénoche. Multi-clustering gives robustness to modules in network. British Journal of Mathematics and Computer Science, 4(16):2344--2351, 2014. [ bib | DOI ]
[17] J-P Comet, M. Noual, A. Richard, J. Aracena, L. Calzone, J. Demongeot, M. Kaufman, A. Naldi, E.H. Snoussi, and D. Thieffry. On circuit functionality in boolean networks. Bulletin of Mathematical Biology, 75(6):906--19, jun 2013. [ bib | DOI | http ]
[18] C. Chaouiya and E. Remy. Logical modelling of regulatory networks, methods and applications. Bulletin of mathematical biology, 75(6):891--5, jun 2013. [ bib | DOI | http ]
[19] L. Spinelli, P. Gambette, C.E. Chapple, B. Robisson, A. Baudot, H. Garreta, L. Tichit, A. Guénoche, and C. Brun. Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters. BioSystems, 113(2):91--95, 2013. [ bib | DOI ]
[20] D. Bérenguier, C. Chaouiya, P.T. Monteiro, A. Naldi, E. Remy, D. Thieffry, and L. Tichit. Dynamical modeling and analysis of large cellular regulatory networks. Chaos (Woodbury, N.Y.), 23(2):025114, jun 2013. [ bib | DOI | http ]
[21] Alain Guénoche. Multiple consensus trees: a method to separate divergent genes. BMC Bioinformatics, 14(1):46, Feb 2013. [ bib | DOI | http ]

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