MABioS

Where and when

Group meetings and seminars take place every Monday, 3:00 PM, in I2M-South, Luminy and/or via Zoom.

2023

2023/06/19 - Internal -
2023/06/12 - Internal -
2023/06/05 - Internal -
2023/05/22 - External - Mathieu Carrière - Topological analysis of immunofluorescence images
2023/05/15 - Internal - Morgane Térézol - ODAMNet: a Python package to study molecular relationship between chemicals and rare diseases
2023/04/17 - Internal - Judith Lambert - Clustering patients from patient networks constructed from different similarity measures: application to a medico-administrative database
2023/04/03 - External - Dominique Barbolosi - Sur l'intérêt des modèles phénoménologiques en oncologie clinique
2023/03/27 - External - Mégane Boujeant - BioGOLDnet in the GOLD initiative
2023/03/20 - Internal - Nadine Ben Boina - Most permissive semantics as a tool to refine Boolean models
2023/03/13 - Internal - José Antonio Sánchez-Villanueva - Modeling of the regulatory network behind Retinoic Acid resistance in acute promyelocytic leukaemia
2023/03/06 - External - Nazlı Sıla Kara - Understanding ALS: Combination of network biology, protein modeling and genetic epidemiology to untangle complex disease mechanisms underlying ALS
2023/02/27 - Internal - Anaïs Baudot & Morgan Terezol - Feedback on IFB's Integrative Bioinformatics training
2023/02/20 - Internal - Paul Villoutreix - Inference and machine learning methods in developmental biology: bridging morphogenesis with gene expression patterns
2023/02/06 - External - Rafika Boutalbi - Clustering approaches for tensor data
2023/01/30 - Internal - Solène Song - How to describe development quantitatively using time-evolving multiplex networks?
2023/01/23 - External - Elva Maria Novoa Del Toro - MetClassNet in a nutshell: using metabolomic networks to fill the knowledge gap in the metabolism
2023/01/16 - Internal - Ozan Özışık - GENETWORK4DIAG, patient support based gene prioritization

2022

2022/12/05 - External - Linus Bleistein - Learning the dynamics of sparsely observed interacting systems for real-time prediction
2022/11/28 - External - Nicola Pedreschi - The temporal rich club phenomenon
2022/11/14 - External - Stephen Chapman - Advances in flux balance analysis
2022/11/07 - Internal - Nadine Ben Boina - Mathematical modelling of rare diseases
2022/10/24 - Internal - David Hirst - Inferring differentially active biological processes, from small sample gene expression data sets, with a transfer learning approach to matrix factorization
2022/10/10 - External - Juliana Arcila-Galvis - Characterization of the monocyte lineage enhancers and their role in disease
2022/10/03 - Internal - Saran Pankaew - PhD defense rehearsal
2022/09/26 - Internal - Anthony Baptista - PhD defense rehearsal
2022/09/12 - External - Galadriel Brière - Methodological developments for omic data integration: applications to oncology and neurosciences
2022/07/13 - Internal - Saran Pankaew - Calcium signaling is impaired in PTEN-deficient T cell acute lymphoblastic leukemia
2022/07/06 - External - Julio R. Banga - Optimization in computational systems biology
2022/06/27 - Internal - Samina Kausar - An Automated and Interactive Seurat scRNA-seq analysis and visualization framework
2022/06/20 - External - Leo Diaz - Hypergraphs as a general representation of dynamical systems
2022/06/13 - Internal - Laurent Tichit - DecoupleR: ensemble of computational methods to infer biological activities from omics data
2022/05/23 - External - Laura Cifuentes Fontanals - Control strategy identification in Boolean networks
2022/05/08 - Internal - Morgana Terezol - Orsum: a Python package for filtering and comparing enrichment analyses using a simple principle
2022/04/25 - External - Marina Esteban Medina - Leveraging systems biology and machine learning for accelerating drug repurposing in the rare disease landscape
2022/03/28 - External - José Antonio Sánchez-Villanueva - Modeling of a transcriptional and epigenetic network to predict and overcome treatment resistance in acute promyelocytic leukaemia
2022/03/14 - External - Carl Herrmann - Divide and rule: approaches for dimensional reduction and data integration of multi-omics datasets
2022/03/07 - External - Pauline Brochet - Multi-omic analysis to decipher the pathogenic process associated to Chagas disease Cardiomyopathies
2022/02/21 - Internal - Francesca Zaccagnino - Contextualisation of signalling fluctuations in resilient versus vulnerable biological systems: an experimental and modelling approach
2022/02/07 - Internal - Nadine Ben Boina - Mathematical Modelling of rare diseases
2022/01/24 - External - Thien Vu Manh - Activation trajectory of splenic plasmacytoid dendritic cells during an in vivo viral infection, using single cell approaches
2022/01/17 - Internal - Samina Kausar - Analysis and Comparison of Vector Space and Metric Space Representations in QSAR Modeling
2022/01/10 - Internal - Laurent Tichit - From algorithms on trees to network analysis: biological applications

2021

2021/12/13 - External - Benoit Ballester - A data parasite story : from integration of omic data to the identification of regulatory regions transcription
2021/11/29 - Internal - David Hirst - Inferring differentially active biological processes, from small sample gene expression data sets, with a transfer learning approach to matrix factorization
2021/11/22 - External - Solène Song - Random walks on large networks reveal the influence of local heterogeneities: the migration of T cells in lymph nodes as a use case
2021/11/15 - External - Saswati Saha - Detecting higher-order epistasis interactions using mixed-effect conditional inference forest (epiMEIF)
2021/11/08 - Internal - Anthony Baptista - Multilayer models and exploration methods for biological networks
2021/10/11 - Internal - Saran Pankaew - Modelling PTEN & TCR signaling network in thymocytes
2021/09/27 - Internal - Céline Chevalier - Validation of an in vitro model able to reproduce the pharyngeal mesoderm cells' fate
2021/09/20 - External - Cécile Capponi - A contribution in ML and biology, part III
2021/09/13 - Internal - Léonard Hérault - Study of haematopoietic stem cell ageing using systems biology: RNA sequencing and gene regulatory Boolean network at the single cell level
2021/09/06 - External - Cécile Capponi - A contribution in ML and biology, part II
2021/07/05 - External - Cécile Capponi - Some contributions in ML and biology, part I
2021/06/21 - External - Alberto Valdeolivas Urbelz - Spatial transcriptomics to better understand the heterogeneity in human Colorectal cancer & Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data
2021/06/14 - Internal - Judith Lambert - Identifying association between genotypes and patient care trajectories using patient's network
2021/05/31 - Internal - Louise Labatie & David Hirst - MSc thesis defence rehearsal
2021/05/17 - Internal - Nadine Ben Boina & Mathieu Boulinguiez - MSc thesis defence rehearsal
2021/05/10 - Internal - Stephen Chapman - Development of an integrated sustainability matrix to depict challenges and trade-offs of introducing bio-based plastics in the food packaging value chain
2021/04/26 - Internal - Francesca Zaccagnino - Contextualisation of signalling fluctuations in resilient versus vulnerable biological systems: an experimental and modelling approach
2021/03/29 - Internal - Maxime Lucas - Phasik: Inferring cell cycle phases from a partially temporal network of protein interactions
2021/03/22 - External - Michael Pierrelee - TimeNexus: A Novel Cytoscape App to Analyze Time-Series Data Using Temporal MultiLayer Networks (tMLNs)
2021/03/15 - External - Delphine Potier - Using single-cell approaches to better understand T-cell differentiation and leukemogenesis
2021/03/08 - Internal - Saran Pankaew - Modelling PTEN & TCR signaling network in thymocytes
2021/02/15 - Internal - Ozan Özışık - Network approaches for rare diseases - What we do in EJP-RD (European Joint Programme on Rare Diseases)
2021/02/08 - Internal - Vera Pancaldi - Network approaches from chromatin to tissues
2021/01/18 - Internal - Damien Courtine - The fungus Drechmeria coniospora: insights into the increase of virulence after 20 years of culture

2020

2020/11/23 - Internal - Stephen Chapman - Construction of a logical model, focusing on the crosstalk between Hematopoietic stem cells and Mesenchymal stromal cells, and the first steps towards myelofibrosis
2020/11/02 - Internal - Francesca Zaccagnino - Contextualisation of signalling fluctuations in resilient versus vulnerable biological systems: an experimental and modelling approach
2020/10/05 - Internal - Ozan Özışık - Myopathies: distal, proximal, sometimes both
2020/09/28 - External - Jean-Marc Schwartz - Systems and network-based approaches for the investigation of human diseases
2020/08/31 - Internal - Anthony Baptista - Multilayer models and exploration methods for biological networks
2020/06/22 - External - Fabien Jourdan - Metabolic networks to interpret and predict metabolism
2020/06/15 - External - Rion Brattig Correia - Using complex systems methods to improve human health: from genes responsible for diseases to the epidemiology of drug-drug interactions
2020/06/08 - Internal - Ariel Chenet & Ndeye Bireume Sarr - MSc thesis defence rehearsal
2020/06/01 - Internal - Marine Ha-Shan & Maroua Chahdil - MSc thesis defence rehearsal
2020/04/13 - External - Anna Niarakis - Automated inference of large-scale Boolean models, based on network topology and semantics of static molecular maps. Application on Rheumatoid Arthritis and the RA-map
2020/04/06 - External - Alain Barrat - Modeling social contagion: beyond networks
2020/03/16 - Internal - Anthony Baptista - Studying relationships b etween rare and common diseases with multilayer genomic, molecular and disease networks
2020/02/03 - External - Franck Delaplace - Controlability of the interactome
2020/01/27 - External - Alberto Valdeolivas Urbelz - Overview of the projects in Saez-Rodriguez Group, Heidelberg

2019

A calendar of previous seminars is located here.

Useful links

Where and when

2023

2022

2021

2020

2019