Where and when
Group meetings and seminars take place every Monday, 3:00 PM, either in MMG seminar room, La Timone or in I2M lecture room Herbrand, Luminy.
2024
- 07-01 - Internal - Thomas Stosskopf - Benchmarking Knowledge Graphs embedding approaches
- 06-17 - External - Alexis Poindron - The unate compatibility problem in regulatory Boolean networks
- 06-10 - External - David-Alexandre Trégouët - Impact of 5'UTR variants altering upstream open reading frames on the genetics of rare & common diseases
- 06-03 - Internal - Clément Moroldo - Stochastic Boolean Networks to assess epigenetic mechanisms impacting Hematopoietic Stem Cells ageing
- 05-21 - External - Franck Picard - In silico single-cell metabolism analysis unravels a new transition stage of CD8 T cells 4 days post-infection
- 05-06 - External - Philippe Roudot - Hematopoietic Stem and Progenitor Cell Mobility and Cytoskeletal Dynamics
- 04-29 - Internal - Laurent Tichit & Bianca Habermann - Analysing mitochondrial tissue diversity by integrating systematic multi-omics data
- 03-25 - Internal - Inès Assalit - Comprehensive Analysis of EEG and ECG Signals in Epileptic Seizures Prediction
- 03-18 - Internal - Solène Song - Deciphering chemical signals guiding T cells towards and in lymph node
- 03-11 - External - Guillaume Theyssier - On symmetry versus asynchronism in automata networks
- 02-26 - External - Florence Bansept - Host-associated microbial communities: stories of migration
- 02-19 - External - Jean-Michel Arbona - Neural network and kinetic modelling of human genome replication
- 02-12 - External - Baptiste Alberti - econstructing spatial gene expression and enhancer activity in Drosophila embryos with scRNA-seq and optimal transport
- 02-05 - Internal - Philippe Baratta - Spatial statistics in observational cosmology
- 02-05 - Internal - Elsa Fanchon - Data science & operations research
- 01-23 - External - Elias Ventre - Calibration of stochastic models of gene expression from time-courses of single-cell datasets
- 01-15 - External - Elena Queirolo - From switching systems to smooth simulations - what persists?
- 01-08 - Internal - Clément Moroldo - Epigenomic-aware modelling of hematopoiesis
2023
- 11-06 - Internal - Élisabeth Remy - Qualitative modelling of genetic regulatory networks
- 10-23 - Internal - Maroua Chahdil - Integration and exploration of knowledge networks related to rare diseases to optimize diagnostic and therapeutic processes
- 10-16 - External - Elen Goujon - Handling confounding factors in analyzing the transcriptomic data from Chornobyl tree frogs
- 10-09 - External - Jocelyn Dunstan - Advances in natural language processing in Chile
- 10-02 - Internal - Benjamin Loire - All you ever wanted to know about scRNAseq analysis
- 09-18 - External - Estefania Torrejon - Analysis and integration of omics data to understand the role of Extracellular Vesicles in Diabetes Type II
- 09-11 - Internal - Sevda Rafatova - Inspecting the role of Prkar1a during cardiac development by single cell analysis
- 06-26 - Internal - Zachary Assoumani - Revisiting and extending probabilistic Boolean networks
- 06-19 - Internal - Maylis Mesples - Analyse de données protéomiques pour comprendre les spécificités du cancer du sein Triple-Négatif
- 06-19 - Internal - Jude-Felix Tenywa - Omics data analysis for the evolutionary analysis of T-cell Acute Lymphoblastic Leukemia
- 06-19 - Internal - Valentin Jossemit - Towards a better data management
- 06-12 - Internal - Zachary Assoumani - Analyse combinatoire et probabiliste de nuages de points géométriques
- 06-05 - Internal - Cécile Beust - Multilayer Biological Network Exploration for Premature Aging Diseases
- 06-05 - Internal - Hoang-Anh Nguyen - Network approaches for the bioinformatics analysis of Acute Leukaemia of Ambiguous Lineage
- 05-22 - External - Mathieu Carrière - Topological analysis of immunofluorescence images
- 05-15 - Internal - Morgane Térézol - ODAMNet: a Python package to study molecular relationship between chemicals and rare diseases
- 04-17 - Internal - Judith Lambert - Clustering patients from patient networks constructed from different similarity measures: application to a medico-administrative database
- 04-03 - External - Dominique Barbolosi - Sur l'intérêt des modèles phénoménologiques en oncologie clinique
- 03-27 - External - Mégane Boujeant - BioGOLDnet in the GOLD initiative
- 03-20 - Internal - Nadine Ben Boina - Most permissive semantics as a tool to refine Boolean models
- 03-13 - Internal - José Antonio Sánchez-Villanueva - Modeling of the regulatory network behind Retinoic Acid resistance in acute promyelocytic leukaemia
- 03-06 - External - Nazlı Sıla Kara - Understanding ALS: Combination of network biology, protein modeling and genetic epidemiology to untangle complex disease mechanisms underlying ALS
- 02-27 - Internal - Anaïs Baudot & Morgan Terezol - Feedback on IFB's Integrative Bioinformatics training
- 02-20 - Internal - Paul Villoutreix - Inference and machine learning methods in developmental biology: bridging morphogenesis with gene expression patterns
- 02-06 - External - Rafika Boutalbi - Clustering approaches for tensor data
- 01-30 - Internal - Solène Song - How to describe development quantitatively using time-evolving multiplex networks?
- 01-23 - External - Elva Maria Novoa Del Toro - MetClassNet in a nutshell: using metabolomic networks to fill the knowledge gap in the metabolism
- 01-16 - Internal - Ozan Özışık - GENETWORK4DIAG, patient support based gene prioritization
2022
- 12-05 - External - Linus Bleistein - Learning the dynamics of sparsely observed interacting systems for real-time prediction
- 11-28 - External - Nicola Pedreschi - The temporal rich club phenomenon
- 11-14 - External - Stephen Chapman - Advances in flux balance analysis
- 11-07 - Internal - Nadine Ben Boina - Mathematical modelling of rare diseases
- 10-24 - Internal - David Hirst - Inferring differentially active biological processes, from small sample gene expression data sets, with a transfer learning approach to matrix factorization
- 10-10 - External - Juliana Arcila-Galvis - Characterization of the monocyte lineage enhancers and their role in disease
- 10-03 - Internal - Saran Pankaew - PhD defense rehearsal
- 09-26 - Internal - Anthony Baptista - PhD defense rehearsal
- 09-12 - External - Galadriel Brière - Methodological developments for omic data integration: applications to oncology and neurosciences
- 07-13 - Internal - Saran Pankaew - Calcium signaling is impaired in PTEN-deficient T cell acute lymphoblastic leukemia
- 07-06 - External - Julio R. Banga - Optimization in computational systems biology
- 06-27 - Internal - Samina Kausar - An Automated and Interactive Seurat scRNA-seq analysis and visualization framework
- 06-20 - External - Leo Diaz - Hypergraphs as a general representation of dynamical systems
- 06-13 - Internal - Laurent Tichit - DecoupleR: ensemble of computational methods to infer biological activities from omics data
- 05-23 - External - Laura Cifuentes Fontanals - Control strategy identification in Boolean networks
- 05-08 - Internal - Morgana Terezol - Orsum: a Python package for filtering and comparing enrichment analyses using a simple principle
- 04-25 - External - Marina Esteban Medina - Leveraging systems biology and machine learning for accelerating drug repurposing in the rare disease landscape
- 03-28 - External - José Antonio Sánchez-Villanueva - Modeling of a transcriptional and epigenetic network to predict and overcome treatment resistance in acute promyelocytic leukaemia
- 03-14 - External - Carl Herrmann - Divide and rule: approaches for dimensional reduction and data integration of multi-omics datasets
- 03-07 - External - Pauline Brochet - Multi-omic analysis to decipher the pathogenic process associated to Chagas disease Cardiomyopathies
- 02-21 - Internal - Francesca Zaccagnino - Contextualisation of signalling fluctuations in resilient versus vulnerable biological systems: an experimental and modelling approach
- 02-07 - Internal - Nadine Ben Boina - Mathematical Modelling of rare diseases
- 01-24 - External - Thien Vu Manh - Activation trajectory of splenic plasmacytoid dendritic cells during an in vivo viral infection, using single cell approaches
- 01-17 - Internal - Samina Kausar - Analysis and Comparison of Vector Space and Metric Space Representations in QSAR Modeling
- 01-10 - Internal - Laurent Tichit - From algorithms on trees to network analysis: biological applications
2021
- 12-13 - External - Benoit Ballester - A data parasite story : from integration of omic data to the identification of regulatory regions transcription
- 11-29 - Internal - David Hirst - Inferring differentially active biological processes, from small sample gene expression data sets, with a transfer learning approach to matrix factorization
- 11-22 - External - Solène Song - Random walks on large networks reveal the influence of local heterogeneities: the migration of T cells in lymph nodes as a use case
- 11-15 - External - Saswati Saha - Detecting higher-order epistasis interactions using mixed-effect conditional inference forest (epiMEIF)
- 11-08 - Internal - Anthony Baptista - Multilayer models and exploration methods for biological networks
- 10-11 - Internal - Saran Pankaew - Modelling PTEN & TCR signaling network in thymocytes
- 09-27 - Internal - Céline Chevalier - Validation of an in vitro model able to reproduce the pharyngeal mesoderm cells' fate
- 09-20 - External - Cécile Capponi - A contribution in ML and biology, part III
- 09-13 - Internal - Léonard Hérault - Study of haematopoietic stem cell ageing using systems biology: RNA sequencing and gene regulatory Boolean network at the single cell level
- 09-06 - External - Cécile Capponi - A contribution in ML and biology, part II
- 07-05 - External - Cécile Capponi - Some contributions in ML and biology, part I
- 06-21 - External - Alberto Valdeolivas Urbelz - Spatial transcriptomics to better understand the heterogeneity in human Colorectal cancer & Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data
- 06-14 - Internal - Judith Lambert - Identifying association between genotypes and patient care trajectories using patient's network
- 05-31 - Internal - Louise Labatie & David Hirst - MSc thesis defence rehearsal
- 05-17 - Internal - Nadine Ben Boina & Mathieu Boulinguiez - MSc thesis defence rehearsal
- 05-10 - Internal - Stephen Chapman - Development of an integrated sustainability matrix to depict challenges and trade-offs of introducing bio-based plastics in the food packaging value chain
- 04-26 - Internal - Francesca Zaccagnino - Contextualisation of signalling fluctuations in resilient versus vulnerable biological systems: an experimental and modelling approach
- 03-29 - Internal - Maxime Lucas - Phasik: Inferring cell cycle phases from a partially temporal network of protein interactions
- 03-22 - External - Michael Pierrelee - TimeNexus: A Novel Cytoscape App to Analyze Time-Series Data Using Temporal MultiLayer Networks (tMLNs)
- 03-15 - External - Delphine Potier - Using single-cell approaches to better understand T-cell differentiation and leukemogenesis
- 03-08 - Internal - Saran Pankaew - Modelling PTEN & TCR signaling network in thymocytes
- 02-15 - Internal - Ozan Özışık - Network approaches for rare diseases - What we do in EJP-RD (European Joint Programme on Rare Diseases)
- 02-08 - Internal - Vera Pancaldi - Network approaches from chromatin to tissues
- 01-18 - Internal - Damien Courtine - The fungus Drechmeria coniospora: insights into the increase of virulence after 20 years of culture
2020
- 11-23 - Internal - Stephen Chapman - Construction of a logical model, focusing on the crosstalk between Hematopoietic stem cells and Mesenchymal stromal cells, and the first steps towards myelofibrosis
- 11-02 - Internal - Francesca Zaccagnino - Contextualisation of signalling fluctuations in resilient versus vulnerable biological systems: an experimental and modelling approach
- 10-05 - Internal - Ozan Özışık - Myopathies: distal, proximal, sometimes both
- 09-28 - External - Jean-Marc Schwartz - Systems and network-based approaches for the investigation of human diseases
- 08-31 - Internal - Anthony Baptista - Multilayer models and exploration methods for biological networks
- 06-22 - External - Fabien Jourdan - Metabolic networks to interpret and predict metabolism
- 06-15 - External - Rion Brattig Correia - Using complex systems methods to improve human health: from genes responsible for diseases to the epidemiology of drug-drug interactions
- 06-08 - Internal - Ariel Chenet & Ndeye Bireume Sarr - MSc thesis defence rehearsal
- 06-01 - Internal - Marine Ha-Shan & Maroua Chahdil - MSc thesis defence rehearsal
- 04-13 - External - Anna Niarakis - Automated inference of large-scale Boolean models, based on network topology and semantics of static molecular maps. Application on Rheumatoid Arthritis and the RA-map
- 04-06 - External - Alain Barrat - Modeling social contagion: beyond networks
- 03-16 - Internal - Anthony Baptista - Studying relationships b etween rare and common diseases with multilayer genomic, molecular and disease networks
- 02-03 - External - Franck Delaplace - Controlability of the interactome
- 01-27 - External - Alberto Valdeolivas Urbelz - Overview of the projects in Saez-Rodriguez Group, Heidelberg
2019
A calendar of previous seminars is located here.